|
|
(16 intermediate revisions by 2 users not shown) |
Line 1: |
Line 1: |
| FEAP is designed to allow users to modify the code for their owm purposes. If at all possible, users should always use the user hooks provided in the user directory. These allow users to make custom elements, material models, new FEAP commands, et cetera. The [http://projects.ce.berkeley.edu/feap/pmanual85.pdf programmers manual] provides an introduction to programming in FEAP. | | FEAP is designed to allow users to modify the code for their owm purposes. If at all possible, users should always use the user hooks provided in the user directory. These allow users to make custom elements, material models, new FEAP commands, et cetera. The [http://projects.ce.berkeley.edu/feap/pmanual_86.pdf programmers manual] provides an introduction to programming in FEAP. |
|
| |
|
| To use the user hooks, it is recommended to make a copy of the relevant stub file in a separate project directory. Then add the full path name to this edited copy to main/makefile on the OBJECTS line so that it will be built into FEAP the next time you compile it. If you are using windows, add the copy to your executable project. Even though there is a version of the stub file in your FEAP archive file, the compiler should use your edited copy instead of the one in the archive. | | To use the user hooks, it is recommended to make a copy of the relevant stub file in a separate project directory. Then add the full path name to this edited copy to main/makefile on the OBJECTS line so that it will be built into FEAP the next time you compile it. If you are using windows, add the copy to your executable project. Even though there is a version of the stub file in your FEAP archive file, the compiler should use your edited copy instead of the one in the archive. |
Line 6: |
Line 6: |
|
| |
|
| === Programmers Manual === | | === Programmers Manual === |
| The [http://projects.ce.berkeley.edu/feap/pmanual85.pdf programmers manual] can be found on the FEAP project site [http://projects.ce.berkeley.edu/feap http://projects.ce.berkeley.edu/feap]. | | The programmers manual can be found on the FEAP project site [http://projects.ce.berkeley.edu/feap http://projects.ce.berkeley.edu/feap]. |
|
| |
|
| === User Elements === | | === User Elements === |
| | ==== AceGen and Mathematica ==== |
| | A template has been developed for generating user elements in an automated manner using AceGen and Mathematica. The Mathematica files, the generated user elements, examples, and benchmark examples can be found on the [https://github.com/bhajay/FEAP-AceGen FEAP-AceGen] GitHub repository. Detailed documentation about the template can be found in the [http://faculty.ce.berkeley.edu/sanjay/ucb_semm_2021_01.pdf SEMM report (UCB/SEMM-20211/01)]. |
| | |
| === User Interface Elements === | | === User Interface Elements === |
| === User Memory Allocation === | | === User Memory Allocation === |
Line 78: |
Line 81: |
| === Assembling User Contributions to the Tangent and RHS === | | === Assembling User Contributions to the Tangent and RHS === |
| === Calling MATLAB functions from FEAP === | | === Calling MATLAB functions from FEAP === |
| MATLAB functions can be called from FEAP if you have installed the MATLAB Engine (toolbox) when you set up MATLAB on your computer. The basic steps to getting this work are gone over below for a specific use case where I would like to use a MATLAB (*.m) file to compute a material model response for a user material.
| | FEAP can be coupled to [[MATLAB]] using the MATLAB Engine. This permits the two way exchange of data between FEAP and routines written in MATLAB. A big advantage of this is that one can leverage the vast array of MATLAB utilities (albeit while paying MATLAB's performance penalty). |
| | |
| The basics steps are as follows. (1) Have MATLAB and the MATLAB Engine installed. (2) Create a user macro that will start the MATLAB engine. This permits communication between the MATLAB data space and FEAP's data space using Unix sockets. (3) Set up your user material routine to send FEAP data to MATLAB to compute the material response and to receive is back from MATLAB. (4) Edit the makefile to allow for the compilation of subroutines with special MATLAB function calls as well as linking of the main program with the MATLAB Engine.
| |
| | |
| '''Setup the MATLAB Engine'''
| |
| | |
| The code to start up the MATLAB Engine will be placed in a user macro. To initialize the MATLAB Engine we just need to call this macro command once at the start of a FEAP run. For concreteness we use <code>umacr6</code>. It is important to save the file using a .F extender instead of .f, so that the compiler will run the preprocessor on it before compiling; this is all tested on a Mac which should be the same as Linux too. In the routine there are two user customizable strings: (a) The path to the matlab executable, '/Applications/MATLAB_2019a.app/bin/matlab' in my case, and the path to where my MATLAB *.m files are located, '/Users/sg/Feap/ver86/main' in my case. To use the macro, just type <code>MLENgine</code> at the macro prompt.
| |
| <pre>
| |
| !$Id:$
| |
| subroutine umacr6(lct,ctl)
| |
| | |
| ! * * F E A P * * A Finite Element Analysis Program
| |
| | |
| !.... Copyright (c) 1984-2019: Regents of the University of California
| |
| ! All rights reserved
| |
| | |
| !-----[--.----+----.----+----.-----------------------------------------]
| |
| ! Modification log Date (dd/mm/year)
| |
| ! Original version 01/11/2006
| |
| ! 1. Remove 'prt' from argument list 09/07/2009
| |
| ! 2. Add 'uhelpfl' comment option 19/10/2017
| |
| ! 3. Add 'help' comment option - replaces 'uhelpfl' 07/01/2019
| |
| ! 4. Create the ML Engine init macro 10/16/2019
| |
| !-----[--.----+----.----+----.-----------------------------------------]
| |
| ! Purpose: Initialize the MATLAB Engine
| |
| | |
| ! Inputs:
| |
| ! lct - Command character parameters
| |
| ! ctl(3) - Command numerical parameters
| |
| | |
| ! Outputs:
| |
| ! N.B. Users are responsible for command actions. See
| |
| ! programmers manual for example.
| |
| !-----[--.----+----.----+----.-----------------------------------------]
| |
| implicit none
| |
| | |
| # include "fintrf.h"
| |
| # include "mleng.h"
| |
| | |
| include 'iofile.h'
| |
| include 'umac1.h'
| |
| | |
| mwPointer engOpen
| |
| integer :: status, engEvalString
| |
| | |
| character (len=15) :: lct
| |
| | |
| logical :: pcomp
| |
| real (kind=8) :: ctl(3)
| |
| | |
| save
| |
| | |
| ! Set command word
| |
| | |
| if(pcomp(uct,'mac6',4)) then ! Usual form
| |
| uct = 'mlen' ! Specify 'name'
| |
| | |
| elseif(pcomp(lct,'help',4)) then ! Write help information
| |
| | |
| write(*,*) 'COMMAND: MLENgine inits Matlab Engine'
| |
| | |
| elseif(urest.eq.1) then ! Read restart data
| |
| | |
| elseif(urest.eq.2) then ! Write restart data
| |
| | |
| else ! Perform user operation
| |
| | |
| ep = engOpen('/Applications/MATLAB_R2019a.app/bin/matlab')
| |
| | |
| if (ep.eq.0) then
| |
| write(*,*) 'WARNING: Matlab engine failed to initialize'
| |
| call plstop
| |
| endif
| |
| status = engEvalString(ep,'addpath /Users/sg/Feap/ver86/main')
| |
| if (status.ne.0) write(*,*) 'WARNING: Matlab path not set'
| |
| | |
| | |
| endif
| |
| | |
| end subroutine umacr6
| |
| </pre>
| |
| Note that this macro also includes two *.h files
| |
| <pre>
| |
| # include "fintrf.h"
| |
| # include "mleng.h"
| |
| </pre>
| |
| The first is a MATLAB file and is located in the MATLAB application directory. The second, I have placed in my FEAP main directory. It contains the pointer to the MATLAB Engine object that is returned by the <code>endOpen()</code> function call.
| |
| It contents are
| |
| <pre>
| |
| mwPointer ep
| |
| common /mleng/ ep
| |
| </pre>
| |
| | |
| '''User material''' | |
| First I need a user material input routine. This is standard, except I am going to be lazy and not read in any material properties (they will be hard wired in the code). I will use <code>umati6.f</code> and give it the user name <code>MLMAterial</code>.
| |
| <pre>
| |
| !$Id:$
| |
| subroutine umati6(vtype,vv, d, ud, n1,n3)
| |
| | |
| ! * * F E A P * * A Finite Element Analysis Program
| |
| | |
| !.... Copyright (c) 1984-2019: Regents of the University of California
| |
| ! All rights reserved
| |
| | |
| !-----[--.----+----.----+----.-----------------------------------------]
| |
| ! Modification log Date (dd/mm/year)
| |
| ! Original version 01/11/2006
| |
| !-----[--.----+----.----+----.-----------------------------------------]
| |
| ! Purpose: User input for material model 6
| |
| | |
| ! Inputs:
| |
| ! vtype - Name of material model
| |
| ! vv(5) - Command line real data
| |
| ! d(*) - Program material parameter data
| |
| | |
| ! Outputs:
| |
| ! ud(*) - Material parameter data for model
| |
| ! n1 - Number of history items/point (time dependent)
| |
| ! n3 - Number of history items/point (time independent)
| |
| !-----[--.----+----.----+----.-----------------------------------------]
| |
| implicit none
| |
| | |
| character (len=15) :: vtype
| |
| | |
| logical :: pcomp
| |
| integer :: n1,n3
| |
| real (kind=8) :: vv(5),d(*),ud(*)
| |
| | |
| ! Set command name
| |
| | |
| if(pcomp(vtype,'mat6',4)) then ! Default form DO NOT CHANGE
| |
| vtype = 'mlma' ! Specify 'name'
| |
| | |
| ! Input user data and save in ud(*) array
| |
| | |
| else ! Perform input for user data
| |
| | |
| endif
| |
| | |
| end subroutine umati6
| |
| | |
| </pre>
| |
|
| |
|
| === User Functions === | | === User Functions === |
Line 227: |
Line 89: |
| === User Utility for Sparse Arrays === | | === User Utility for Sparse Arrays === |
| === User Macro Commands === | | === User Macro Commands === |
| ==== User Macro to reset element data ==== | | ==== User Macro to reset material data ==== |
| Copy one of the <code>umacrXX.f</code> files from the <code>user</code> folder to your working directory. Add the include files
| | If one would like to change material properties in a computation from the command line, this is possible using a [[user macro customized to change material data]]. |
| <pre>
| |
| include 'cdat1.h'
| |
| include 'pointer.h'
| |
| include 'comblk.h'
| |
| </pre>
| |
| Set the <code>uct</code> variable to what you would like to name your macro (4 letters). Let's say
| |
| <pre>
| |
| uct = 'resd'
| |
| </pre>
| |
| We will call the macro as <code>resd,,ma,dl,dv</code> where <code>ma</code> will correspond to our material number and <code>dl</code> the data location that we will change, and <code>dv</code> the new data value we would like to store.
| |
| Now after the <code>else</code> place the following code
| |
| <pre>
| |
| call resdsub(hr(np(25)),nint(ctl(1)),nint(ctl(2)),ctl(3))
| |
| </pre>
| |
| This will pass the location of the element data arrays for all materials and our 3 command line parameters <code>ma,dl,dv</code> to the subroutine <code>resdsub</code>; the first two parameters are passed as nearest integers and the data arrays are at offset <code>np(25)</code> in <code>hr</code>. The subroutine <code>resdsub</code> should look like
| |
| <pre>
| |
| subroutine resdsub(d,ma,dl,dv)
| |
| implicit none
| |
| include 'cdat1.h'
| |
| integer :: ma, dl
| |
| real (kind=8) :: d(ndd,*), dv
| |
| | |
| d(dl,ma) = dv
| |
| | |
| end
| |
| </pre>
| |
| | |
|
| |
|
| === User Mesh Manipulation Commands === | | === User Mesh Manipulation Commands === |
Line 262: |
Line 97: |
| === User Mass Allocation === | | === User Mass Allocation === |
| === User Problem Inputs === | | === User Problem Inputs === |
| | When reading user inputs from the input file it is recommended that one use a [[Polling Input]] programing style. |
| | |
| === Setting User Additions to the Profile === | | === Setting User Additions to the Profile === |
| === User Proportional Load === | | === User Proportional Load === |
Line 269: |
Line 106: |
| === Memory === | | === Memory === |
|
| |
|
| '''Basics'''
| | FEAP's [[memory]] management system is based on a fixed location in the user memory space and offsets from that location to memory blocks obtained from the operating system via calls to malloc. |
| | |
| FEAP's memory management system utilizes an offset technique. There are two (short arrays) <code>hr( )</code> of type real*8 and <code>mr( )</code> of type integer, which are both defined in the common block <code>comblk.h</code>. When FEAP arrays are allocated they are done so using the system <code>malloc</code>. This is either done in the source file <code>unix/memory/cmem.c</code>, if on Linux/MAC, or in the source file <code>windows/memory/setmem.f</code>, if on windows. | |
| | |
| For each FEAP array that is allocated the offset to its location in memory in units of real*8 or integer chunks of memory is stored in the array <code>np( )</code>. Thus for the DR array, array number 26, which holds the residual, its first element is equivalent to <code>hr(np(26))</code>. For integer arrays like IE, array number 32, which holds the element assembly information, its first element is equivalent to <code>mr(np(32))</code>. In this way FEAP provides a functionality to access all of its internal arrays through a combined use of the common blocks <code>comblk.h</code> and <code>pointer.h</code>, which contains the <code>np( )</code> array.
| |
| | |
| '''Checksumming FEAP arrays'''
| |
| | |
| When chasing memory errors under Linux/MAC there are two utility functions that can be helpful. In particular
| |
| <pre>
| |
| call cmemumark(np(xx),precision,ipr)
| |
| </pre>
| |
| computes and stores a checksum of the data associated with array xx (set xx to the number of the array you are interested in, set precision to either 1 for integer arrays or 2 for reals, set ipr to 1 for 8 byte integers and 2 for 4 byte integers). You can then check the integrity of the data relative to this checksum at any other place in the code with
| |
| <pre>
| |
| call cmemucheck(np(xx),precision,ipr,result)
| |
| </pre>
| |
| where <code>result</code> is an integer =1 for no change and =0 if the data has changed.
| |
| | |
| '''Checksumming FEAP array headers'''
| |
| | |
| Each FEAP array when allocated is also given a header block, the integrity of the header data to each FEAP array can be checked with
| |
| <pre>
| |
| call cmemcheck(np(xx),precision,ipr)
| |
| </pre>
| |
| | |
| '''GDB is your friend'''
| |
| | |
| Sometimes data gets overwriting in strange ways and it is very hard to track down when certain arrays are being corrupted. The very best way to debug such problems is to use GDB (or a similar debugger). Make sure that you have compiled the code with the option to generate symbol tables <code> -g </code> on Linux/MAC systems. Then start the code in the debugger <code> gdb feap </code>, set breakpoints and step/continue to see what is going on.
| |
| | |
| A really useful feature is to use the watch command to allow the program to stop whenever a particular memory address is changed. Suppose I am interest on when the first element of the residual array DR (array 26) changes. I would do the following
| |
| <pre>
| |
| (gdb) break pnewprob_
| |
| </pre>
| |
| to first set a break point in pnewprob where DR is allocated. | |
| <pre>
| |
| (gdb) run
| |
| </pre>
| |
| to get going. Then when the program stops
| |
| <pre>
| |
| (gdb) break +646
| |
| </pre>
| |
| to set a break point after the point where DR has been allocated.
| |
| Alternately your debugger may accept
| |
| <pre>
| |
| (gdb) break pnewprob.f:646
| |
| </pre>
| |
| Then,
| |
| <pre>
| |
| (gdb) run
| |
| </pre>
| |
| Then
| |
| <pre>
| |
| (gdb) p np(26)
| |
| (gdb) p &hr(1)
| |
| </pre>
| |
| to get the offset to DR and the memory address of hr(1). Suppose these were 195297 and 0xd1ba60. Now compute the address of the first element of DR as 195297*8 + 0xd1ba60, the multiplier is 8(bytes) since DR is a double precision real array. Note 195297*8 = 1562376 = 0x17d708. Adding to the base address we get 0xe99168. Now set a watch on this memory location and continue. The program will stop whenever this address location is altered.
| |
| <pre>
| |
| (gdb) watch *(double *)0xe99168
| |
| (gdb) c
| |
| </pre>
| |
| | |
| See the [https://sourceware.org/gdb/onlinedocs/gdb/Set-Watchpoints.html GDB manual watchpoint section] for additional details.
| |
| | |
| '''Valgrind is incredible'''
| |
| | |
| A second very valuable debugging tool is [http://valgrind.org/ Valgrind]. This amazing tool can track down virtually any memory issue you may have with amazing efficiency. Your code will run quite slow in valgrind, BUT it will help you locate error very fact. Just install from the web site or from your package manager (yum, apt, dnf, port, fink, etc.). To run simply type
| |
| <pre>
| |
| valgrind feap
| |
| </pre>
| |
| Make sure that you have compiled your code with the symbols, <code>-g</code>.
| |
FEAP is designed to allow users to modify the code for their owm purposes. If at all possible, users should always use the user hooks provided in the user directory. These allow users to make custom elements, material models, new FEAP commands, et cetera. The programmers manual provides an introduction to programming in FEAP.
To use the user hooks, it is recommended to make a copy of the relevant stub file in a separate project directory. Then add the full path name to this edited copy to main/makefile on the OBJECTS line so that it will be built into FEAP the next time you compile it. If you are using windows, add the copy to your executable project. Even though there is a version of the stub file in your FEAP archive file, the compiler should use your edited copy instead of the one in the archive.
It is also recommended that you obtain a good Fortran reference book, e.g. Modern Fortran Explained by Metcalf, Reid, and Cohen.
Programmers Manual
The programmers manual can be found on the FEAP project site http://projects.ce.berkeley.edu/feap.
User Elements
AceGen and Mathematica
A template has been developed for generating user elements in an automated manner using AceGen and Mathematica. The Mathematica files, the generated user elements, examples, and benchmark examples can be found on the FEAP-AceGen GitHub repository. Detailed documentation about the template can be found in the SEMM report (UCB/SEMM-20211/01).
User Interface Elements
User Memory Allocation
User Block Generation
User Body Forces
User Materials
The method to implement a user material model in FEAP has been described in Section 4.2 of FEAP Programmer Manual. Here we would like to clarify a few things in the user material model with history variables.
The time-dependent history variables
The time-dependent variables are meant to be used for quantities that change in "TIME". That is if you have a solution that advances from time to the history variables for are stored in hr(nh1)
and those for are stored in hr(nh2)
. These can be state variables in incremental stress-strain relations. In your solution algorithm, you must use the solution commands TIME
and DT
. The structure of your user material model should look like this:
1. In your umati*.f routine, set n1
equals the number of history variabales per Gauss point.
2. In your umodelf.f or umatl*.f subroutine, read the history variables from the previous globally converged time step from hn(*)
3. Compute new values of history variables
4. Write your newly computed history values to h1(*)
for next time step . Do not write to hn(*)
!
After that, FEAP will carry out a global Newton iteration. If the global Newton iteration is not converged, then the values you wrote to h1(*)
will be discarded and your routine will be called again. You will repeat again from step 2 until it is converged. Then, the values in h1(*)
will be copied over into hn(*)
for use in the next time step when you execute the next TIME
command.
The time-independent history variables
If the history variable does not depend in time then we consider them to be independent of "TIME", so you could use the time-independent history variables as it only stores one copy of each value instead of two in the previous case. This type of history variable is more like a status variable depending on deformation. Here is the procedure to implement such kind of history variables,
1. In your umati*.f routine, set n3
equals the number of history variables per element.
2. In your umodelf.f or umatl*.f subroutine, read the history variables from the previous globally converged time step from hr(nh3+i)
where i
runs from 0 to the number of history variables (per gauss point) minus one and nh3
points to the location of first history variable for the current Gauss point.
3. Compute new values of history variables.
4. Update history variables in hr(*)
with the newly computed values if needed.
Initialization of history variables in element or materials routines
The history variables are initialized to zero by default. But if you want to initialize any of the history variables to non-zero values you can do this when ISW .eq. 14
. For example, if we have m
history variables per gauss point, then you can initialize the time-dependent history variables to 1.0d0
in your umodelf.f or umatl*.f subroutine as follows,
c... INITIALIZE HISTORY VARIABLES
IF (ISW .EQ. 14) THEN
do i = 1, m
hn(i) = 1.0d0
h1(i) = 1.0d0
end do
END IF
For time-independent history variables,
c... INITIALIZE HISTORY VARIABLES
IF (ISW .EQ. 14) THEN
do i = 0, (m - 1)
hr(nh3 + i ) = 1.0d0
end do
END IF
This segment of code will be executed for each Gauss point of each element.
(Note that this page is under development)
User Debugging File Outputs
User Transient Algorithms
User Export of Tangent and Residual for Code Coupling
Set User Data for Element Plotting
Assembling User Contributions to the Tangent and RHS
Calling MATLAB functions from FEAP
FEAP can be coupled to MATLAB using the MATLAB Engine. This permits the two way exchange of data between FEAP and routines written in MATLAB. A big advantage of this is that one can leverage the vast array of MATLAB utilities (albeit while paying MATLAB's performance penalty).
User Functions
Global User Parameters
Set User Boundary Codes
User Displacement Imports
User Utility for Sparse Arrays
User Macro Commands
User Macro to reset material data
If one would like to change material properties in a computation from the command line, this is possible using a user macro customized to change material data.
User Mesh Manipulation Commands
User Mesh Generation Commands
User Plotting Commands
User Mass Allocation
User Problem Inputs
When reading user inputs from the input file it is recommended that one use a Polling Input programing style.
Setting User Additions to the Profile
User Proportional Load
User Rotational Updates
Custom User Banner Messages
User Solvers
Memory
FEAP's memory management system is based on a fixed location in the user memory space and offsets from that location to memory blocks obtained from the operating system via calls to malloc.